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National resources: Germany

Introduction

This page provides useful information and resources with a focus on research data management in Germany. An overview of services provided by ELIXIR Germany can be found on the websites of de.NBI/ELIXIR Germany and ELIXIR.

Funders

Policies and Recommendations for Research Data

Research Data Initiatives

Tools and resources

Tailored to users in Germany

Developed and/or deployed by institutions and organisations in Germany.

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Resource Description Related pages Registry
ELN Finder

Electronic Laboratory Notebook (ELN) selection service.

Documentation and meta... Researcher Research Software Engi...
ELN Guide

Guide for Electronic Laboratory Notebooks (ELN).

Documentation and meta... Researcher Research Software Engi...
ELN Video Tutorials

Video Tutorials for Electronic Laboratory Notebooks (ELN).

Documentation and meta... Researcher Research Software Engi...
GFBio Data Management Plan Tool

DMP creation and support by German Federation for Biological Data (GFBio).

Data management plan
GHGA

The German Human Genome-Phenome Archive.

Data storage Documentation and meta... Researcher Data Steward
PUBLISSO

Open access publishing platform for life sciences.

Data publication Researcher Data Steward
RDMO

Research Data Management Organiser.

Data management plan

Germany contributes to

Institutions and organisations in Germany are actively involved in the development of the following tools and resources.

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Resource Description Related pages Registry
BacDive

A searchable database for bacteria specific information

Microbial biotechnology Tool info Standards/Databases Training
BRENDA

Database of enzyme and enzyme-ligand information, across all taxonomic groups, manually extracted from primary literature and extended by text mining procedures

Enzymology and biocata... Microbial biotechnology Tool info Standards/Databases Training
BRENDA Tissue Ontology

A structured controlled vocabulary for the source of an enzyme. It comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.

Enzymology and biocata... Standards/Databases Training
Chemotion

Chemotion is a repository for chemistry research data that provides solutions for current challenges to store research data in a feasible manner, allowing the conservation of domain specific information in a machine readable format.

Enzymology and biocata... Tool info Standards/Databases
Copasi

COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

Enzymology and biocata... Tool info Training
DataPLAN

Data Management Plan (DMP) generator that focuses on plant science.

Plant sciences Tool info
e!DAL

Electronic data archive library is a framework for publishing and sharing research data

Plant Phenomics Plant sciences Tool info Training
e!DAL-PGP

Plant Genomics and Phenomics Research Data Repository

Plant Genomics Plant Phenomics Standards/Databases Training
EnzymeML

EnzymeML is a standardised data format for catalytic reaction data, designed to ensure consistency and interoperability. It enables researchers to store, share, and enrich reaction data with detailed metadata in JSON or XML formats.

Enzymology and biocata... Tool info
EURISCO

European Search Catalogue for Plant Genetic Resources

Plant sciences Tool info
FAIRDOM-SEEK

A data Management Platform for organising, sharing and publishing research datasets, models, protocols, samples, publications and other research outcomes.

NeLS Plant Phenomics Microbial biotechnology Plant sciences Data discoverability Documentation and meta... Data storage Tool info
FAIRDOMHub

Data, model and SOPs management for projects, from preliminary data to publication, support for running SBML models, etc. (public SEEK instance)

NeLS Plant Genomics Plant Phenomics Microbial biotechnology Plant sciences Data discoverability Documentation and meta... Standards/Databases Training
Galaxy

Open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.

Marine Metagenomics Single-cell sequencing Data analysis Data provenance Data storage Tool info Training
PANGAEA

Data Publisher for Earth and Environmental Science

Data publication Tool info Standards/Databases Training
SABIO-RK

SABIO-RK is a curated database that contains information about biochemical reactions, their kinetic rate equations with parameters and experimental conditions.

Enzymology and biocata... Tool info Standards/Databases Training
Standards for Reporting Enzyme Data (STRENDA)

Resource of standards for reporting enzyme data

Enzymology and biocata... Microbial biotechnology Standards/Databases
STRENDA DB

STRENDA DB is a storage and search platform that incorporates the STRENDA Guidelines in a user-friendly, web-based system.

Enzymology and biocata... Standards/Databases

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